BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB013C05LP1|AL426491
(799 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig541 1549 0.0
>3x_Contig541
Length = 1792
Score = 1549 bits (781), Expect = 0.0
Identities = 795/800 (99%), Gaps = 1/800 (0%)
Strand = Plus / Minus
Query: 1 gatcatcaaagggggggcagggacagggatacgacaagggctggggaaaaaaaaaaagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 gatcatcaaagggggggcagggacagggatacgacaagggctggggaaaaaaaaaaagat 1286
Query: 61 agatacgattggccgggtaagcctggggaaatgtagcaagtgcgggtaagttaaaaggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 agatacgattggccgggtaagcctggggaaatgtagcaagtgcgggtaagttaaaaggta 1226
Query: 121 accacgtgactccggaagagtcacgtg-ttncggacttttttctctagatctcagctttt 179
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 1225 accacgtgactccggaagagtcacgtggttacggacttttttctctagatctcagctttt 1166
Query: 180 tatcggtcttaccctgccctcctgccccctgccccttccctttgccccaaaaagaaagga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 tatcggtcttaccctgccctcctgccccctgccccttccctttgccccaaaaagaaagga 1106
Query: 240 aatctgttggatttcgctcaggccatccctttcgttaatatcggttatcgctttacacac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 aatctgttggatttcgctcaggccatccctttcgttaatatcggttatcgctttacacac 1046
Query: 300 tgcacatccttctgtccaaaaggaatccagaagtttagcttttccttcctttcccacaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 tgcacatccttctgtccaaaaggaatccagaagtttagcttttccttcctttcccacaga 986
Query: 360 cattagcctaggccctctctcatcatttgcatgcctcagccaatgtaccaagaataacgc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 cattagcctaggccctctctcatcatttgcatgcctcagccaatgtaccaagaataacgc 926
Query: 420 aacgaggttgggaaattttaacccaacaatcgatgcagatgtgacaagagattagagacg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 aacgaggttgggaaattttaacccaacaatcgatgcagatgtgacaagagattagagacg 866
Query: 480 ttccagataccagattacacagcttgtgctagcagagtgacatatggtggtgttgtgtct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ttccagataccagattacacagcttgtgctagcagagtgacatatggtggtgttgtgtct 806
Query: 540 cgtttagtacctgtaatcgagagtgttcaaatcagtcgatttgaacacccttactgccac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cgtttagtacctgtaatcgagagtgttcaaatcagtcgatttgaacacccttactgccac 746
Query: 600 tgaatattgattgaataccgtttattgaaggttttatgagtgatcttctttcggtccagg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgaatattgattgaataccgtttattgaaggttttatgagtgatcttctttcggtccagg 686
Query: 660 acaatttgttgagctttttctatgtagagttccgtcccttttttttttttttttgctttc 719
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acaatntgttgagcttnttctatgtagagttccgtcccttttttttttttttttgctttc 626
Query: 720 tcgcacttactagcactatttttttttcacacactaaaacactttattttaatctatata 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcgcacttactagcactatttttttttcacacactaaaacactttattttaatctatata 566
Query: 780 tatatatatatatatatdta 799
||||||||||||||||| ||
Sbjct: 565 tatatatatatatatatgta 546
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,317
Number of Sequences: 1807
Number of extensions: 28317
Number of successful extensions: 5283
Number of sequences better than 1.0e-20: 1
length of query: 799
length of database: 10,358,551
effective HSP length: 16
effective length of query: 783
effective length of database: 10,329,639
effective search space: 8088107337
effective search space used: 8088107337
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)